PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_15335-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 91aa    MW: 10216.7 Da    PI: 7.0712
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_15335-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.7e-11233438
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-S CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKl 38
                     +h ++Er+RR+++N+ ++ Lr+l+P+++   +++ 
  TRIUR3_15335-P1  2 THIAVERNRRKQMNEYLAALRSLMPPSY---AQRG 33
                     8*************************84...3333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.99E-6132No hitNo description
SuperFamilySSF474591.74E-9141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.185149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-8234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-9239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MTHIAVERNR RKQMNEYLAA LRSLMPPSYA QRGHRLTVLH LNMSSAGHMV LYSLSLKVED  60
DCQLTSVAEI ATAAHQIVEK IQEEQELTAA A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053995e-39AP005399.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0676H02.
GenBankAP0055745e-39AP005574.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1595_D08.
GenBankAP0149655e-39AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126175e-39CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612232.15e-27PREDICTED: transcription factor bHLH94
RefseqXP_015612233.15e-27PREDICTED: transcription factor bHLH94
TrEMBLM8AHV52e-61M8AHV5_TRIUA; Transcription factor bHLH96
STRINGBGIOSGA030936-PA1e-26(Oryza sativa Indica Group)
STRINGLOC_Os09g29360.12e-26(Oryza sativa Japonica Group)
STRINGORGLA09G0101900.12e-26(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.18e-18bHLH family protein